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scBlood: A comprehensive single-cell accessible chromatin database of blood cells 期刊论文
COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL, 2024, 卷号: 23, 页码: 2746-2753
作者:  Zhao, Yu;  Yu, Zheng-Min;  Cui, Ting;  Li, Li-Dong;  Li, Yan-Yu;  Qian, Feng-Cui;  Zhou, Li-Wei;  Li, Ye;  Fang, Qiao-Li;  Huang, Xue-Mei;  Zhang, Qin-Yi;  Cai, Fu-Hong;  Dong, Fu-Juan;  Shang, De-Si;  Li, Chun-Quan;  Wang, Qiu-Yu
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TRANSCRIPTIONAL CONTROL  INTERLEUKIN-6  MONOCYTE  ARCHIVE  ATLAS  SEQ  
iMeta Conference 2024: Building an innovative scientific research ecosystem for microbiome and One Health 期刊论文
IMETA, 2024, 卷号: 3, 期号: 6
作者:  Wang, Yao;  Hou, Huiyu;  Luo, Hao;  Xun, Jiani;  Ma, Chuang;  Yang, Haifei;  Bai, Defeng;  Yousuf, Salsabeel;  Lyu, Hujie;  Zhang, Tianyuan;  Wan, Xiulin;  Yao, Xiaofang;  Ma, Tengfei;  Zhou, Yuanping;  Zhu, Zhihao;  Zeng, Meiyin;  An, Sanqi;  Bai, Qing;  Bai, Yao;  Cao, Guodong;  Cao, Tingting;  Cao, Yongkai;  Chang, Chihmin;  Chang, Lijia;  Chen, Bo;  Chen, Dai;  Chen, Dijun;  Chen, Hanqing;  Chen, Jiali;  Chen, Jinfeng;  Chen, Wei-Hua;  Chen, Xinhai;  Chen, Yue;  Chen, Zhangran;  Cheng, Cheng;  Cheng, Quan;  Dai, Xi-Jian;  Deng, Chaowen;  Deng, Feilong;  Deng, Jingwen;  Dong, Chang-Sheng;  Dong, Lei;  Duan, Lianhui;  Duan, Yi;  Fan, Qingjie;  Fang, Chao;  Fang, Tingyu;  Fang, Wensheng;  Fang, Zhencheng;  Fu, Min;  Fu, Minjie;  Gao, Cong;  Gao, Hao;  Gao, Weiwei;  Gao, Xinrui;  Gao, Yi-Zhou;  Geng, Yan;  Gong, Wenping;  Gu, Shaohua;  Gu, Xia;  Gu, Zhengquan;  Guo, Jian-Wei;  Guo, Junjie;  Guo, Qiuyan;  Guo, Xiang;  Guo, Xiaoqian;  Han, Dongfei;  Han, Ziyi;  Hao, Yanan;  He, Jiale;  He, Jianquan;  He, Jianyu;  He, Ruolin;  Hou, Guosen;  Hu, Bin;  Hu, Haibo;  Hu, Yi;  Hu, Yongfei;  Hu, Yucan;  Huang, Guanyin;  Huang, Haiyun;  Huang, Jiaomei;  Huang, Shenghui;  Jia, Baolei;  Jian, Xingxing;  Jiang, Chao;  Jiang, Kun;  Jiang, Lanyan;  Jiang, Shuaiming;  Jiao, Jian-Yu;  Jin, Hao;  Jin, Jiajia;  Kong, Siyuan;  Lai, Xinxing;  Leng, Yuxin;  Li, Bang;  Li, Bing;  Li, Fang;  Li, Hao;  Li, Huanjie;  Li, Jing;  Li, Kai;  Li, Lanqi;  Li, Leyuan;  Li, Minghan;  Li, Pengsong;  Li, Wei;  Li, Wei;  Li, Xianyu;  Li Xuemeng;  Li, Yafei;  Li, Yuantao;  Li, Zhi;  Liang, Liqin;  Liang, Rong;  Liang, Zhuobin;  Liu, Qingya;  Liu, Dejian;  Liu, Huiheng;  Liu, Jinchao;  Liu, Li;  Liu, Lihui;  Liu, Moyang;  Liu, Ran;  Liu, Shuai;  Liu, Tianyang;  Liu, Wei;  Liu, Wenjuan;  Liu, Xiaomin;  Liu, Yang;  Liu, Yichen;  Liu, Yina;  Liu, Yuan;  Liu, Zhe;  Liu, Zhipeng;  Liu, Zhiquan;  Long, Chunhao;  Long, Yun;  Lu, Changying;  Lu, Chao;  Lu, Cheng;  Lu, Qi;  Luan, Yaning;  Luo, Peng;  Luo, Sheng;  Ma, Ning;  Ma, Xiao-Ya;  Ma, Yan;  Mao, Wenjun;  Meng, Yuanfa;  Ni, Yan;  Ni, Yawen;  Ning, Kang;  Niu, Dongze;  Peng, Kai;  Peng, Zhengwu;  Qian, Xubo;  Qiu, Zhiguang;  Qu, Hui;  Qu, Zepeng;  Ren, Yan;  Ren, Zhigang;  Shen, Youming;  Shi, Lin;  Shi, Linlin;  Shi, Wenxuan;  Shi, Yongpeng;  Song, Tianyuan;  Song, Xiaohui;  Song, Xiaoming;  Song, Xiaowei;  Su, Qi;  Su, Yufan;  Sun, Lifang;  Sun, Qiang;  Sun, Tiefeng;  Sun, Yunke;  Tang, Hua;  Tang, Wenjing;  Yu, Tao;  Tian, Simon;  Wang, Shuo;  Wang, Bowen;  Wang, Cheng;  Jin, Wang;  Wang, Leli;  Wang, Liangliang;  Wang, Lixiao;  Wang, Mingbang;  Wang, Ming-Ke;  Wang, Pingyi;  Wang, Shaolin;  Wang, Shaopu;  Wang, Xinxia;  Wang, Xueqiang;  Wei, Mi;  Wei, Yan;  Wei, Yanxia;  Wei, Yongjun;  Wen, Chaoliang;  Wen, Xin;  Wu, Linkun;  Wu, Shengru;  Wu, Yuting;  Xia, Shuting;  Xia, Xiaodong;  Xia, Yu;  Xiang, Xionggen;  Xiao, Chuanxing;  Xiao, Weihua;  Xiao, Yingping;  Xie, Ruohan;  Xing, Rui;  Xu, Hui;  Xu, Wei;  Xu, Zhimin;  Xue, Hongliang;  Yan, Chao;  Yan, Qiu-Long;  Yan, Shaofei;  Yan, Xiuchuan;  Yang, Mengli;  Yang, Yufan;  Yang, Zhipeng;  Yang, Ziyuan;  Yao, Guixiang;  Yao, Yanlai;  Yi, Xianfu;  Yin, Chong;  Yin, Mingliang;  Yu, Shicheng;  Yu, Ying;  Yu, Yongyao;  Yuan, Fusong;  Zhai, Shao-Lun;  Zhang, Bo;  Zhang, Chen;  Zhang, Fang;  Zhang, Feng-Li;  Zhang, Hengguo;  Zhang, Jinping;  Zhang, Junya;  Zhang, Kun;  Zhang, Li;  Zhang, Lin;  Zhang, Lingxuan;  Zhang, Meng;  Zhang, Qian;  Zhang, Runan;  Zhang, Tongtong;  Zhang, Tongxue;  Zhang, Weipeng;  Zhang, Yong;  Zhang, Yuchao;  Zhang, Yujun;  Zhang, Zeng;  Zhang, Zhengxiao;  Zhang, Zhi-Feng;  Zhao, Boxi;  Zhao, Yanyan;  Zhao, Yibing;  Zhao, Ziwei;  Zheng, Diwei;  Zheng, Ying;  Zhi, Wenqiang;  Zhong, Jixin;  Zhong, Xiangjian;  Zhou, Wei;  Zhou, Xin;  Zhou, Zhemin;  Zhou, Zhichao;  Zhu, Congmin;  Zhu, Feiying;  Zhu, Xiaodie;  Zou, Yutian;  Zhou, Hongling;  Lei, Lei;  Bi, Yanliang;  Shi, Hubing;  Sun, Hui-Zeng;  Jin, Shuangxia;  Ren, Wenkai;  Dai, Lei;  Wang, Xin;  Lan, Canhui;  Liu, Hongwei;  Liu, Shuang-Jiang;  Yin, Yulong;  Shi, Chun-Lin;  Gan, Ren-You;  Zhao, Fangqing;  Yu, Jun;  Chen, Tong;  Hong, Xin;  Yang, Hua;  Zhang, Bangzhou;  Chen, Shifu;  Li, Xiaodong;  Gao, Yunyun;  Liu, Yong-Xin
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π-HuB: the proteomic navigator of the human body 期刊论文
NATURE, 2024, 卷号: 636, 期号: 8042, 页码: 322-331
作者:  He, Fuchu;  Aebersold, Ruedi;  Baker, Mark S.;  Bian, Xiuwu;  Bo, Xiaochen;  Chan, Daniel W.;  Chang, Cheng;  Chen, Luonan;  Chen, Xiangmei;  Chen, Yu-Ju;  Cheng, Heping;  Collins, Ben C.;  Corrales, Fernando;  Cox, Juergen;  Weinan, E.;  Van Eyk, Jennifer E.;  Fan, Jia;  Faridi, Pouya;  Figeys, Daniel;  Gao, George Fu;  Gao, Wen;  Gao, Zu-Hua;  Goda, Keisuke;  Goh, Wilson Wen Bin;  Gu, Dongfeng;  Guo, Changjiang;  Guo, Tiannan;  He, Yuezhong;  Heck, Albert J. R.;  Hermjakob, Henning;  Hunter, Tony;  Iyer, Narayanan Gopalakrishna;  Jiang, Ying;  Jimenez, Connie R.;  Joshi, Lokesh;  Kelleher, Neil L.;  Li, Ming;  Li, Yang;  Lin, Qingsong;  Liu, Cui Hua;  Liu, Fan;  Liu, Guang-Hui;  Liu, Yansheng;  Liu, Zhihua;  Low, Teck Yew;  Lu, Ben;  Mann, Matthias;  Meng, Anming;  Moritz, Robert L.;  Nice, Edouard;  Ning, Guang;  Omenn, Gilbert S.;  Overall, Christopher M.;  Palmisano, Giuseppe;  Peng, Yaojin;  Pineau, Charles;  Poon, Terence Chuen Wai;  Purcell, Anthony W.;  Qiao, Jie;  Reddel, Roger R.;  Robinson, Phillip J.;  Roncada, Paola;  Sander, Chris;  Sha, Jiahao;  Song, Erwei;  Srivastava, Sanjeeva;  Sun, Aihua;  Sze, Siu Kwan;  Tang, Chao;  Tang, Liujun;  Tian, Ruijun;  Vizcaino, Juan Antonio;  Wang, Chanjuan;  Wang, Chen;  Wang, Xiaowen;  Wang, Xinxing;  Wang, Yan;  Weiss, Tobias;  Wilhelm, Mathias;  Winkler, Robert;  Wollscheid, Bernd;  Wong, Limsoon;  Xie, Linhai;  Xie, Wei;  Xu, Tao;  Xu, Tianhao;  Yan, Liying;  Yang, Jing;  Yang, Xiao;  Yates, John;  Yun, Tao;  Zhai, Qiwei;  Zhang, Bing;  Zhang, Hui;  Zhang, Lihua;  Zhang, Lingqiang;  Zhang, Pingwen;  Zhang, Yukui;  Zheng, Yu Zi;  Zhong, Qing;  Zhu, Yunping;  Tan, Chris Soon Heng;  Gao, Mingxia;  Gao, Qiang;  Gao, Yushun;  Guo, Xuejiang;  He, Jie;  He, Jun;  He, Qing-Yu;  Hou, Jinlin;  Huang, Canhua;  Jia, Chenxi;  Kuster, Bernhard;  Li, Chaoying;  Li, Dong;  Li, Yanchang;  Liu, Siqi;  Liu, Xiaonan;  Liu, Ya;  Liu, Zhongyang;  Lu, Haojie;  Nie, Yongzhan;  Okada, Mariko;  Qian, Guojun;  Qin, Hongqiang;  Rao, Yu;  Rao, Zihe;  Ren, Xianwen;  Ren, Yan;  Shen, Feng;  Shen, Lin;  Su, Shicheng;  Tan, Minjia;  Tang, Ben Zhong;  Tao, Sheng-Ce;  Wang, Jian;  Wang, Tong;  Wei, Liming;  Wong, Catherine C. L.;  Xie, Xiaoliang Sunney;  Xu, Li;  Xu, Ping;  Yang, Huanming;  Yang, Jianjun;  Ye, Mingliang;  Ying, Wantao;  Yu, Xiaobo;  Yuan, Yaxiang;  Zeng, Qingcun;  Zhan, Qimin;  Zhang, Xiaofei;  Zhang, Xu;  Zhang, Ying;  Zhong, Nan-Shan;  Zhou, Feng;  Zhu, Yi;  Zhang, Zemin
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CHINA PUSHES  DISEASE  ATLAS  DRAFT  
ScImmOmics: a manually curated resource of single-cell multi-omics immune data 期刊论文
NUCLEIC ACIDS RESEARCH, 2024
作者:  Li, Yan-Yu;  Zhou, Li-Wei;  Qian, Feng-Cui;  Fang, Qiao-Li;  Yu, Zheng-Min;  Cui, Ting;  Dong, Fu-Juan;  Cai, Fu-Hong;  Yu, Ting-Ting;  Li, Li-Dong;  Wang, Qiu-Yu;  Zhu, Yan-Bing;  Tang, Hui-Fang;  Hu, Bao-Yang;  Li, Chun-Quan
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DENDRITIC CELLS  ACTIVATION  EXPRESSION  MONOCYTE  MARKER  LANDSCAPE  DYNAMICS  FAMILY  CD69  
FunlncModel: integrating multi-omic features from upstream and downstream regulatory networks into a machine learning framework to identify functional lncRNAs 期刊论文
BRIEFINGS IN BIOINFORMATICS, 2024, 卷号: 26, 期号: 1
作者:  Li, Yan-Yu;  Qian, Feng-Cui;  Zhang, Guo-Rui;  Li, Xue-Cang;  Zhou, Li-Wei;  Yu, Zheng-Min;  Liu, Wei;  Wang, Qiu-Yu;  Li, Chun-Quan
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LONG NONCODING RNA  STEM-CELLS  PROSTATE-CANCER  WEB SERVER  PLURIPOTENCY  DIFFERENTIATION  ASSOCIATION  ACETYLATION  KNOWLEDGE  DATABASE  
High-quality reference genome of cowpea beetle Callosobruchus maculatus 期刊论文
SCIENTIFIC DATA, 2024, 卷号: 11, 期号: 1, 页码: 157-172
作者:  Lu, Hao-Ran;  Mao, Chu-Yang;  Zhang, Li-Jie;  He, Jin-Wu;  Wang, Xie-Shuang;  Zhang, Xin-Ying;  Fan, Wei-Li;  Huang, Zheng-Zhong;  Zong, Le;  Cui, Chu-Han;  Wu, Feng-Ming;  Wang, Xue-Li;  Zou, Zhen;  Li, Xue-Yan;  Ge, Si-Qin
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GENE  BRUCHIDAE  SYSTEM  TOOL  VISUALIZATION  ANNOTATION  PREDICTION  COLEOPTERA  PROVIDES  FINDER  
Complexity of avian evolution revealed by family-level genomes 期刊论文
NATURE, 2024
作者:  Stiller, Josefin;  Feng, Shaohong;  Chowdhury, Al-Aabid;  Rivas-Gonzalez, Iker;  Duchene, David A.;  Fang, Qi;  Deng, Yuan;  Kozlov, Alexey;  Stamatakis, Alexandros;  Claramunt, Santiago;  Nguyen, Jacqueline M. T.;  Ho, Simon Y. W.;  Faircloth, Brant C.;  Haag, Julia;  Houde, Peter;  Cracraft, Joel;  Balaban, Metin;  Mai, Uyen;  Chen, Guangji;  Gao, Rongsheng;  Zhou, Chengran;  Xie, Yulong;  Huang, Zijian;  Cao, Zhen;  Yan, Zhi;  Ogilvie, Huw A.;  Nakhleh, Luay;  Lindow, Bent;  Morel, Benoit;  Fjeldsa, Jon;  Hosner, Peter A.;  da Fonseca, Rute R.;  Petersen, Bent;  Tobias, Joseph A.;  Szekely, Tamas;  Kennedy, Jonathan David;  Reeve, Andrew Hart;  Liker, Andras;  Stervander, Martin;  Antunes, Agostinho;  Tietze, Dieter Thomas;  Bertelsen, Mads F.;  Lei, Fumin;  Rahbek, Carsten;  Graves, Gary R.;  Schierup, Mikkel H.;  Warnow, Tandy;  Braun, Edward L.;  Gilbert, M. Thomas P.;  Jarvis, Erich D.;  Mirarab, Siavash;  Zhang, Guojie
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MULTIPLE SEQUENCE ALIGNMENT  RESOLVE EARLY BRANCHES  BAYESIAN-ESTIMATION  DIVERGENCE TIMES  BRAIN SIZE  DATA SETS  TREE  PHYLOGENY  BIRDS  LIFE  
Functional types of long trichoid sensilla responding to sex pheromone components in Plutella xylostella 期刊论文
INSECT SCIENCE, 2024
作者:  Li, Xiao-Fei;  Qie, Xing-Tao;  Mo, Bao-Tong;  Wang, Cai-Feng;  Xing, Zeng-Hua;  Zhao, Jin-Yu;  Wang, Chen-Zhu;  Hao, Chi;  Ma, Li;  Yan, Xi-Zhong
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DIAMONDBACK MOTH LEPIDOPTERA  OLFACTORY RECEPTOR NEURONS  HELIOTHIS-VIRESCENS  IDENTIFICATION  MORPHOLOGY  RESPONSES  ELECTROANTENNOGRAM  BIOSYNTHESIS  TRANSDUCTION  ATTRACTANTS  
A national-scale assessment of land subsidence in China's major cities 期刊论文
SCIENCE, 2024, 卷号: 384, 期号: 6693, 页码: 301-306
作者:  Ao, Zurui;  Hu, Xiaomei;  Tao, Shengli;  Hu, Xie;  Wang, Guoquan;  Li, Mingjia;  Wang, Fang;  Hu, Litang;  Liang, Xiuyu;  Xiao, Jingfeng;  Yusup, Asadilla;  Qi, Wenhua;  Ran, Qinwei;  Fang, Jiayi;  Chang, Jinfeng;  Zeng, Zhenzhong;  Fu, Yongshuo;  Xue, Baolin;  Wang, Ping;  Zhao, Kefei;  Li, Le;  Li, Wenkai;  Li, Yumei;  Jiang, Mi;  Yang, Yuanhe;  Shen, Haihua;  Zhao, Xia;  Shi, Yue;  Wu, Bo;  Yan, Zhengbing;  Wang, Mengjia;  Su, Yanjun;  Hu, Tianyu;  Ma, Qin;  Bai, Hao;  Wang, Lijun;  Yang, Ziyan;  Feng, Yuhao;  Zhang, Danhua;  Huang, Erhan;  Pan, Jiamin;  Ye, Huiying;  Yang, Chen;  Qin, Yanwei;  He, Chenqi;  Guo, Yanpei;  Cheng, Kai;  Ren, Yu;  Yang, Haitao;  Zheng, Chengyang;  Zhu, Jiangling;  Wang, Shaopeng;  Ji, Chengjun;  Zhu, Biao;  Liu, Hongyan;  Tang, Zhiyao;  Wang, Zhiheng;  Zhao, Shuqing;  Tang, Yanhong;  Xing, Hanfa;  Guo, Qinghua;  Liu, Yu;  Fang, Jingyun
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SEA-LEVEL RISE  DATASET  MODEL  GENERATION  OIL  
The Microbiome Protocols eBook initiative: Building a bridge to microbiome research 期刊论文
IMETA, 2024, 卷号: 3, 期号: 2
作者:  Gao, Yunyun;  Peng, Kai;  Bai, Defeng;  Bai, Xiao-Ye;  Bi, Yujing;  Chen, Anqi;  Chen, Baodong;  Chen, Feng;  Chen, Juan;  Chen, Lei;  Chen, Tong;  Chen, Wei;  Cheng, Xu;  Cheng, Yanfen;  Cui, Jie;  Dai, Jingjing;  Dai, Junbiao;  Dai, Zhaolai;  Deng, Ye;  Deng, Yi-Zhen;  Ding, Wei;  Fang, Zhencheng;  Fu, Wei;  Gao, Hanbing;  Gu, Shaohua;  Guo, Xue;  Guo, Xuguang;  Han, Dongfei;  He, Lele;  He, Yatao;  Hou, Hui-Yu;  Jia, Baolei;  Jia, Gengjie;  Jiao, Shuo;  Jin, Wei;  Ju, Feng;  Ju, Zhicheng;  Kong, Siyuan;  Lan, Canhui;  Li, Bing;  Li, Da;  Li, Diyan;  Li, Jingdi;  Li, Meng;  Li, Qi;  Li, Qiang;  Li, Wen-Jun;  Li, Xiaofang;  Li, Xuemeng;  Li, Yahui;  Li, You-Gui;  Liang, Zhibin;  Ling, Ning;  Liu, Fufeng;  Liu, Qing;  Liu, Shuang-Jiang;  Lu, Hongye;  Lu, Qi;  Luo, Guangwe;  Luo, Hao;  Luo, Yuheng;  Lyu, Hujie;  Ma, Chuang;  Ma, Liyuan;  Ma, Tengfei;  Ni, Jinfeng;  Pang, Ziqin;  Qiang, Xiaojing;  Qin, Yuan;  Qu, Qingyue;  Ran, Chao;  Ren, Shuqiang;  Shang, Haitao;  Song, Luyang;  Sun, Linyang;  Sun, Weimin;  Tang, Liping;  Tian, Jian;  Wang, Kai;  Wang, Mengzhi;  Wang, Ming-Ke;  Wang, Tao;  Wang, Xiao-Yan;  Wang, Yao;  Wang, Yiwen;  Wang, Youshan;  Wei, Hailei;  Wei, Hong;  Wei, Zhong;  Wen, Tao;  Wu, Jiqiu;  Wu, Linhuan;  Wu, Linkun;  Xi, Jiao;  Xie, Bo;  Xu, Guofang;  Xu, Jun;  Xu, Shanshan;  Xue, Qing;  Yan, Liping;  Yang, Haifei;  Yang, Jun;  Yang, Junbo;  Yang, Ruifu;  Yang, Yalin;  Yang, Ying-Jie;  Yao, Xiaofang;  Yao, Yanpo;  Yousuf, Salsabeel;  Yu, Ke;  Yuan, Zhengrong;  Yuan, Zhilin;  Zhang, Dong;  Zhang, Tianyuan;  Zhang, Weipeng;  Zhang, Yunzeng;  Zhang, Zhaonan;  Zhang, Zhen;  Zhang, Zhi-Feng;  Zhao, Shengguo;  Zhao, Wei;  Zheng, Maosheng;  Zheng, Ziqiang;  Zhou, Xin;  Zhou, Yuanping;  Zhou, Zhigang;  Zhu, Mo;  Zhu, Yong-Guan;  Chu, Haiyan;  Bai, Yang;  Liu, Yong-Xin
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